Harvest software suite for rapid genome alignment and visualization

Release status

07/21/14: v1.0


Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes. Harvest includes Parsnp, a fast core-genome multi-aligner, harvest-tools, a binary archive format and format conversion tool, and Gingr, a dynamic visual platform. Combined they provide rapid core-genome alignments, variant calls, recombination detection, and phylogenetic trees.