Installation from source

Required before building:

  • 64-bit Linux/*nix or OSX (>= v10.7)
  • autoconf && automake
  • gcc (>= v4.2.*)
  • Python (>= 2.6.*)

Build (local)

For your convenience, precompiled binaries provides at:

http://github.com/marbl/harvest

otherwise, to install from source:

git clone https://github.com/marbl/parsnp.git parsnp_src
cd parsnp_src

First (important!), build libMUSCLE:

cd muscle
./autogen.sh
./configure --prefix=`pwd`
make install

Then, build Parsnp:

cd ..
./autogen.sh
./configure
make install

Once both installed (to cwd install by default):

export PARSNPDIR=/path/to/parsnp/install

Alternatively build instructions (requires sudo)

First (important!), build libMUSCLE:

cd muscle
./autogen.sh
./configure --prefix=/usr/local/
sudo make install

Then, build Parsnp:

cd ..
./autogen.sh
./configure --prefix=/usr/local/
sudo make install