Harvest software suite for rapid genome alignment and visualization¶
Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes. Harvest includes Parsnp, a fast core-genome multi-aligner, harvest-tools, a binary archive format and format conversion tool, and Gingr, a dynamic visual platform. Combined they provide rapid core-genome alignments, variant calls, recombination detection, and phylogenetic trees.
- Gingr: Interactive visualization of multi-alignments
- harvest-tools: binary archive and format conversion tool
- Parsnp: rapid core genome multi-alignment